by K-Dense-AI
diffdock is a docking skill for predicting protein-ligand binding poses from PDB structures or protein sequences plus ligands in SMILES, SDF, or MOL2. Use the diffdock skill for structure-based drug design, virtual screening, and confidence-scored pose analysis. It is not for binding affinity prediction.
by K-Dense-AI
The molecular-dynamics skill helps you set up, run, and analyze molecular dynamics simulations with OpenMM and MDAnalysis for Scientific workflows. Use it for protein stability, ligand binding, conformational sampling, and trajectory analysis such as RMSD, RMSF, contact maps, and free energy surfaces. It focuses on practical setup, force fields, and reproducible execution.
by K-Dense-AI
Analyze and engineer protein glycosylation with the glycoengineering skill. Identify N-glycosylation sequons, estimate O-glycosylation hotspots, and support antibody optimization, vaccine design, and glycoengineering for Data Analysis workflows with practical decision guidance.
by K-Dense-AI
esm skill for protein language models, including ESM3 generation and ESM C embeddings. Use this esm guide for protein sequence design, inverse folding, function prediction, and code generation workflows with local inference or the Forge API.
by K-Dense-AI
adaptyv helps you use the Adaptyv Bio Foundry API and Python SDK to install, submit protein sequences, and retrieve assay results. Use this adaptyv skill for API Development, auth setup, request shaping, and practical guidance for binding, screening, thermostability, expression, and fluorescence workflows.
